Sounds like he does have severe congenital deformities. Spine for sure and perhaps others. The doctor was trying to save you money by not taking the x-rays, but such films would tell you how severe the deformity is and give you a prognosis - which it sounds like that is what you are looking for.
I would think the outlook is grave. Of course it is impossible for us to tell in a virtual environment. You can certainly give this
littleLittle noses decongestant
Little tummys guy the best nursing care you can for as long as you can, but with these severe neurological signs and out ward physical deformities this early in life, the prognosis is not good.
As for assistance now, you simply have to take each symptom as it comes. Constipation would need enema / rectal lubrication and soft food diets, problems with urination would need to be corrected quickly as they cannot survive without urinating for very long. As he gains weight a deformed spine may not support the weight.
Yes, it is likely more complications will occur as he grows. All of course depends on the severity of malformations etc. etc.
Good luck and we wish you well with your kindness in attempting to care for a very handicapped kitty.
I'd recommend having a veterinary neurologist evaluate him to make sure it's not anything else, but unfortunately the prognosis for long term would be poor - it'd be a lot of nursing care, and a poorer quality of life if you have to give him enemas several times a time. That said, I've seen cats grow up in carts (who are paralyzed). Ultimately, he could get worse as he grows to a larger size.
Best of luck with him, and keep us posted!
Manx breeders have been trying to eradicate this condition for many years through selective breeding. Sadly, due to the nature of the "tailless" cat, we will never completely see these cases go away. According to my research, this generally shows up when two "rumpies" (cats with no tail vetebrae at all). The trait is a dominant trait but does not always show up due to what geneticists refer to as incomplete dominance. Kittens who receive two copies of the gene almost always die in utero or are stillborn. Kittens who get one copy will carry the gene and pass to their offspring.
SO...if your kitty does happen to improve, neutering is a necessity. I would also consider discussing this with the breeder as they should likely avoid further breeding of this kitten's parents.