Hrd to say, but my guess is that they aren't warts and you just, as you say yourself, never looked there that hard.
I guess
Aldara must work sometimes, but I haven't seen it do so. Besides, it's irritating and expensive.
I think you have two choices. The first, which I favor, is to do nothing further, go for regular Pap smears and Gyn checkups, and let your doctor do the looking, to see if they enlarge, multiply, etc.
The second is to have the doctor cauterize them under local anesthesia, or freeze them.
I'd ask the doctor--if he or she really thinks they're warts, then option #2 is thinkable. Otherwise, I'd go with #1.
Best.
Dr. Rockoff