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Hello! well i'm in a similiar boat as you!! after our chemChem-20 Chem-7 preg this past cycle, and finding out what is "hopefully!!" causing all of our miscarriages, i was so excited to go in for my baseline ultrasound and get everything started, but instead i have three cysts.. for the first time ever i had to go on the pill to hault my cycles : ( they are to stop ovulation and prevent more cysts... and HOPEFULLY the other cysts will disolve in the process.. as far as cysts affecting fertiltiy, if they are just simple fluid filled cysts (which are most common in people having gone through fertility treatments.meds and sounds like thats what yours are) then they have no affect on fertility at all.. unless the ovary torses and causes injury to that ovary.. however thats really really rare, and the reason that they put you on the pill and don't continue with meds when there are good size cysts there, to reduce the risk of torsion.. but otherwise definteyl won't affect your fertilty : ) i'm only on the pill for one month.. then we'll see what is giong on with the cysts.. if they are still there they might want me to go another month on the pill.. however if they do, i might go a natural cycle, since my body tends to make the cysts go away on their own, and i'm not sure what its going to do on the pilll.. UGH so frustrating for sure!!! KEEP me updated! : )