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You're right - you've got a complicated medical history. Have you ever been diagnosed with endometriosis? Have you had your hormone levels checked? Another possibility is scar tissue formation from the ileostomy surgery. In some people, adhesions form, and just keep on growing and attaching to organsOrgan-1 nr that don't like being messed with - like ovaries or bowels. Endometriosis is also notorious for scar tissue formation and painful periods. Have a talk with your gynecologist about this possibility. Both endo and adhesions are diagnosed and treated with laparascopic surgery. Also, if you have endo, your chances of conceiving are greatly lessened.
Just reading your question and I too have posted a similar question about painful periods after an ileostomy. I have just been through a miserable week and every month seems to get worse. The pain, vomiting and feeling of wanting to have a bowel movement is almost unbearable. My husband and I have made the decision not to have children because I am terrified of wounds opening up again as I know I could not give birth naturally. I had my ileostomy re-formed six years ago after developing pouchitis so like you have alot of adhesions and scar tissue which I assume like Jaybay says are causing all the problems. I am terrified to go to my GP in case I am referred back to hospital for more surgery. I have lost all faith in the Irish medical system as I developed MRSA while in the last time and spent four years with an open abdominal wound which a large suture eventually worked its way out of. I am just wondering if you saw any doctors or managed to get any relief. I wish you all the best with trying for a baby and will keep you in my prayers.