runner,
Normally your ankle bressure should be higher then that taken in your arm. The ratio is determined by the pressure in the ankle dived by the arm pressure. Normal values are a ratio > 0.9.
A few things: If your ratio is above 1.3 it may indicate calcified non compressible vessels and should be further evaluated professionally. Also, the cuff you are using is most likely specifically designed for arm pressures only and may not give accurate measurements, especially if your leg muscle build is significane. It is a bedside test and can be performed by your physician, especially if you are having any symptoms.
In the absence of syndromes, the treatment of PVD is really pretty similar to what you are doing. Aggressive physical training, anti platelet and lipid control, and tight control of your blood pressure.
For now I would use your arm pressure for blood pressure titration.
hope this is a start.