I have had numerous kidney-stones, both renal & ureteral (and a few bladder thrown in for good measure), but I can't say that the stones have ever caused the tip on my penis any type of pain.
Of the top of my head, and without really knowing anything about what you have going on, it's difficult to say whether or not your stones and your pain are related in any way.
In my experience, I'd say that they are UNRELATED to one another.
Have you talked to your doctor about this penis-pain? I realize you're in Canada, and getting an appointment with a specialist is difficult at best, but a quick phone-call into the office with your symptoms shouldn't require an appointment, and your doctor should be able to help you with it over the phone.
Post back and let us know what the diagnosis is.
Good luck with your stones and penis pain.