Dear Kim
How you would manage your chronic pain and recurrent ovarian cysts which i assume are from endometriosis will depend on how old you are and whether or not you are trying to have children. For women with your history who have completed child bearing, the most effective solution is to consider the surgical removal of your uterus and both tubes and ovaries. This will cure endometriosis. If you are trying to have child and want to preserve your ovaries and uterus and ovaries at this time, the treatment is usually hormonal. We try to suppress cyst formation with birth control pills or the use of medicines such as lupron that induce artificial menopause.
Finally it is possible that you have endometriosis plus another issue such is irritable bowel syndrome or chronic fatigue or depression. When you met with your doctor, he needs to take a careful history of your symptoms and do a good physical examination. Then together, you need to sort out your goals for fertility, and see if other tests need to be done to rule out other conditions.
best wishes to you