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The fact that you are feeling better and hopefully the fever is gone is a good sign. I would think from this description that you are responding to the antibiotics.
How many days of antibiotics were you given? If the mucous remains discolored and you're down to your last two days of antibiotics, I'd give the doc a call & ask his/her advice. S/he may wish to extend the course or try switching you to a new antibiotic to clear things up. Good luck!