Free T3 has half life of less than a day, so that means that it reaches full effect on serum levels in a week. Symptom changes tend to lag a bit behind changes in serum levels of thyroid hormone, so it is good to be patient with changes. If you do increase to 5 mcg twice a day, I would wait about a month to re-test.
Yes, there is no reason to be concerned about taking T3 long term.
Yes, it is a good idea to go slow with those increases, but there is an unnecessary fear about T3 causing palpitations. If it occurs, it is best to just back off on the dose; however, keep in mind that the thyroid gland produces some T3 along with T4. Also, that T4 is converted to T3 mostly in the cells throughout the body, that all need T3 for metabolism. And your Free T3 is terribly low, which will cause symptoms like those you mentioned.
Personally I would never take supplements like you mentioned unless there is a specific, identified need for which there is evidence that taking it will improve the problem. Otherwise why take it? Better to get your thyroid levels optimized first. Also your D and B12 are at good levels, but you need to also test for ferritin. Ferritin is a form of iron that is very important. It is one of the main factors affecting conversion of T4 to T3. Low ferritin can also cause many symptoms. Ferritin should be at least 70, and some say 100. So I suggest that you also get that tested and then supplement as needed to optimize. But the most important thing for you right now is to get your Free T3 optimal.
You mentioned an adrenal support supplement. What test has made you or the doctor think you needed that?
For your Graves' did you get RAI or a full thyroidectomy?
It is easy to understand why you have symptoms of being hypothyroid. Your Free T4 is fine, but your Free T3 is terribly low. Apparently your body is not adequately converting the T4 to T3. So adding some T3 to your med is directionally correct; however, 5 mcg is not going to be nearly enough. As a start I think you should discuss with your doctor adding 5 mcg twice a day. Most of our members say that symptom relief required Free T4 in the middle of its range, at minimum and Free T3 level in the upper third of its range, or as needed to relieve symptoms. Also, be aware that if increasing your Free T3 level adequately also causes your TSH to become suppressed, that does not mean you have become hyper. You are hyper only if having hyper symptoms due to excessive levels of Free T4 and Free T3. I mention this only to alert you that many hypo patients taking adequate doses of thyroid med find that their TSH becomes suppressed and their doctors erroneously want to reduce med dosage.
Yes, you can take T3 with your morning T4 med. T3 reaches peak effect in about 3-4 hours so it is frequently suggested to split the dose and take half in the morning and half in the early afternoon. But you can take it however it works best for you.
Regarding Vitamin D, I see no reason to increase further, since your level is 55. Your question about magnesium and K were answered on your other thread.
As for Maca, how would it even possibly benefit your thyroid if you don't have a thyroid gland?
Oh, I forgot to add...I'm on Levothyroxin 75mcg
Thanks!