Hello,
Although fatigue and flu like symptoms are uncommon side effects of allergy shots,but they can be confirmed after ruling out other causes of low grade fever like chronic infections,liver disease,SLE etc.
I would recommend discussing this issue with your allergist and also getting a comprehensive profile of yourself for other causes of fever and low grade fever.
Hope it helps.Take care and pls do keep me posted if you have any additional queries.Kind regards.
Hi ! I have Chronic Fatigue Immune Dysfunction Syndrome and one of my problems due to CFS was severe allergies. I had allergy injections in the '90s and like you, I didn't tolerate the injections very well. In my case, I had extreme fatigue and flu like symptoms after every allergy shot. I never did have the local reaction in my upper arm like most people have after getting their shots.
Despite my the advice from my allergist, I eventually chose to quit the injections altogether. Years later, another allergist told me that I made the right choice. (this was even before my CFS diagnosis).
I have learned that patients who have allergies have options. Sublingual therapy is one such option. It is a method of allergy treatment that has been used in Europe for many years. You may want to consider asking your allergiest about sublingual therapy. I hear that it is available in the U.S. now.
http://www.allergychoices.com/clientgenie/siteid/1000162/statusFlag/goGenie/geniesite/22
http://en.wikipedia.org/wiki/Sublingual_immunotherapy