I'm not a physician, just a patient. I'm in my (eek) mid-50's now, and just last year was diagnosed with a PFO. I've since had it repaired via a clam shell device called Amplatzer, and have been AMAZINGLY headache free ever since. Prior, I had headaches every day, with many migraines tossed in for effect.
I, too, was diagnosed with SVT, and a condition called POTS (where your blood flow and heart beats vary depending on your body's position - sitting up, laying down, etc.)
I had seen 7 different cardiologist over a period of 8 years, most of them specializing in arrhythmia's and ablations. One night, I had what felt to me like a stroke - fast, painless, but half by face and body felt numb / tingly. I could function fine, but it FELT wrong. Went to the ER, where they thought it had been a heart attack, as my EEG was abnormal, showing not enough oxygen. They put me in ICU, and then did an emergency angioplasty, which showed NOTHING - no blockage, no buildup, no calcium, zip. They eventually just sent me home. I had an MRI, and ECHO, several EEGs, the angioplasty; all the heart tests they could think of.
I still felt my body wasn't right, as half was still tingly / numb. I went to my internist, who ordered a TEE. There it was - a giant PFO! Yes, my internist found it, but not one of my cardiologists! So, I had the implant (30 minutes plus 12 hours laying flat in bed) and have felt AWESOME ever since. NO headaches; NO migraines, MUCH MORE energy. NO heart palpitations (although I do take Inderal for my tachycardia)... best thing I've EVER done.
So in my experience, yes, a PFO can be missed, even when the doctors are in the arteries looking around; the just didn't look in the veins!
(Oh - the final story: I apparently had a blood clot that went THROUGH the PFO, and then went to my brain, which is what caused the stroke -- yep, a stroke. My stroke wasn't muscular, but sensory -- if you looked at me, you'd never know; my smile is still symmetrical, my arm and leg strenths are equal on both sides -- but my left side is still tingly and numb. I get some sensations back now and then, which are the nerves rebuilding, but it just feel like a battery is buzzing. )
GOOD LUCK to you! Hope this helps.
There is an association of PFO and migraines. If the transthoracic echo is done with agitated saline and with a Valsalva (bearing down like to have a bowel movement) the sensitivity is good. There are ongoing trials to see if closure of the PFO will relieve the headaches.