The CT scan was the best test for your trachea and, you should not have any further concerns about it. Likewise the mediastinal changes are not anything to worry about or even follow-up. In a 29 year old non-smoker, the area of opacity in your right middle lobe is almost certainly post-infectious. Such opacities are common in the middle lobe. Given this, I see no urgency to repeat the CT Scan and, actually, might never repeat it.
This is something that could be followed by chest X-ray. If it is too small to be seen on Chest X-ray, the odds of its being a malignancy, which are already very low, would be even lower. Again in a person this young, with no history of smoking, any lesion equal to or less than one cm. is almost always benign.
This is the opinion of one pulmonologist who has not seen the X-ray and scans. Do not decide to ignore the advice of your local physician based only on my advice. My recommendation is that you have a 2nd opinion from another pulmonologist, before agreeing to any more X-rays or scans.
Since you don't have symptoms, I would be inclined to wait a few months; say 4-6 mo, before having another CT scan. Then you could see if any change in size.
Alternatively you could get a 2nd opinion from another doctor on the need for it at this time; or ask for referral to a pulmonologist for his opinion. The radiologist report doesn't seem to recommend another CT scan now.