Welcome to the forum.
You had a standard HIV antibody test, with negative results. It proves for sure you didn't catch HIV. Although standard advice is for testing 3 months after the last exposure (you're almost there), it really isn't necessary; with the standard tests in use today, negative results at 6-8 weeks are virtually certain. In case you are interested, here is a thread that explains this in more detail:
http://www.medhelp.org/posts/HIV-Prevention/-A-Question-on-Testing/show/1347755
As an additional reassuring comment, I'll point out that you really were not at any significant risk of HIV, which is rare in partners like yours (assuming you are in the US or other industrialized country). However, I hope you also were tested for chlamydia and gonorrhea, which are much more likely than HIV in situations like yours.
As for your HPV, you may or may not have caught it from the partner described here. HPV and abnormal pap smears can take several months or years to show up, and it rarely is possible to know for sure when and from whom any particular infection was acquired. In any case, you were correctly informed about the likely outcome, that it will clear up without any problem. However, you should have one of the HPV vaccines, preferably the one that protects against 4 strains of the virus -- the two that cause 70% of cervical cancer and the two that cause 90% of genital warts. Discuss it with the doctor or clinic you have seen for the pap smear problem.
I hope this helps. Take care. (And use condoms!) HHH, MD