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A single dark circular flat spot (2mm) on penis shaft is wart?

Hi,
I have had unprotected sex with a new partner that I know for 4 months now. We started to not use condom two weeks ago but we have had oral sex from the very first day. since 2 weeks ago we have met 3 times and had several times of unprotected sex each time we met. last time that we had unprotected and oral sex was a week ago and my tonsils became inflamed the day after but not sore. There were a few big bumps on my tonsils that i couldn't breath properly and the bumps have the same color as the tonsils. A day after tonsils became inflamed they became a bit sore. 4 days after the last sex (11 days after the first unprotected sex) I saw a tiny purple spot on my penis shaft which was just a little bit sore only when i touched it (figure 1). 3 days after that, which is today, the spot is a bit bigger (2 mm) and black,like the scab from a healing wound (fig 2). Its surface is not as soft as the adjacent skin but it is not very rough as well. It is symmetrical with even borders, only slightly sore by touch, and single. can it be a wart from HPV, Herpes or it is just from abrasion or any thing else?  My tonsils are getting better now and the bumps on them are getting smaller. By the way, she assured me that she is clean and have had only cold sore in her life.
Thank you for your time in advance.
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You can see the photos in my profile
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