I got chlamydia, and I gave it to my boyfriend. We took medicine and waited a week to have sex. It took a lot to not give in. He kept saying that it would be ok, but I wouldn't let him. I don't know how it works if you only wait three days, but go back and have another STD screening done. If you sill have it wait seven days to have raw sex, but if you can't wait that short amount of time then use a condom until the seven weeks are up.
My bf gave me chlamydia I took the medice but waited 5 days abd used a condom for like a week after. When you go back to the Dr, they'll give you another pap to make sure it's gone. Of not, you gotta take the medicine or you risk the chance of hurting your baby, even blinding him at birth