http://www.medhelp.org/posts/Dogs/dog-skunk-allergies/show/1078747
I found the post above by typing "skunk" into the "search this forum" button right next to the box with your question in it.
Just out of curiosity, what did you use to bathe your dog? The only thing I have found to eliminate the odor is a quart of hydrogen peroxide, 1/4 cup of baking soda, and one teaspoon dish soap. You just sponge it in, let it sit a few minutes, and rinse thoroughly. It's really amazing.
Hope your dog feels better soon.