I have almost the EXACT same thing. ALL of the same pains except the hips. I just posted it in the 'undiagnosed' forum. I'm a healthy 37yo male who works out. The only difference from you is that I didn't get sick, and most of the pain goes away when I'm sleeping except the neck pain. I hope we both find out what's wrong.
Before you settle on CFS/FM - have you been adequately checked for lyme? If Doxycycline helped, then this may be treatable with a longer run of antibiotics. You'll need to find knowledgable doctors which isn't that easy, but it's important to find someone who really understands lyme (there's an organization for it.) Also, a good infectious diseases doctor to look for other pathagens, and rhemotologist. As you check around if you need to know more, let us know...
I also have pain in joints in hands this could be related to typing all day though. I dunno. I am very tired and sometimes fall asleep at work. I remember back in college I would always fall asleep in class. Like almost every day. The pain I am experiencing is a soreness/throbbing pain in joints and a sharp almost cramp-like pain in my muscles. It also feels as if though the ligaments/tendons in my arms have been shortened so that every move of my wrist is stretching them beyond their normal limits!