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Probiotics will help. But in addition to that, go to your doc and ask for a test for C. diff just to rule out that possibility. You didn't mention any of the more obvious symptoms that one gets with C. diff, but if you've been on antibiotics for that long a period of time it's better to be safeSafe driving for teens Safe sex than sorry.
Definitely go in for C Diff testing - make sure they do three days in a row for Clostridium Difficile Toxins A/B. Your GP would probably have more knowledge about this than your dermotologist too. As CalGal said, there are very obvious symptoms of C Diff, but you just may be able to stop it early, if in fact this is what you have. Best of luck to you.