Thanks for using the forum. I am happy to address your questions, and my answer will be based on the information you provided here. Please make sure you recognize that this forum is for educational purposes only, and it does not substitute for a formal office visit with your doctor.
Without the ability to examine you and obtain a history, I can not tell you what the exact cause of your symptoms is nor can I recommend for or against any genetic testing. However I will try to provide you with some useful information.
You are correct in stating that only a minority of patients with ALS, even familial ALS, will have a mutation in the commercially available gene test for FALS. Therefore, the genetic test may not necessarily exclude the diagnosis of ALS if the test shows no abnormality. However, if it is does show an abnormality, it would help make a diagnosis of ALS. You should not undergo genetic testing unless you are fully informed of the benefits and implications; if you continue to have questions about whether or not to get this test, discussion with a genetic counselor would be one option.
One of the most common cause of muscle twitching in the absence of any other symptoms (weakness, stiffness, difficulty talking or swallowing, and others) is benign fasciculation syndrome, which I will abbreviate as BFS. This is a condition in which there are involuntary twitches of various muscle groups, most commonly the legs but also the face, arms, eyes, and tongue. If the diagnosis is confirmed and other causes are excluded, it can be safely said that the likelihood of progression or occurrence of a serious neurologic condition is low. In such cases, the twitches may be related to anxiety/stress, caffeine, and often occur after recent strenuous activity or muscle over-use. It is important in such cases to reduce stress/anxiety levels and to reduce caffeine intake.
An EMG is a good idea to help exclude other causes and make the diagnosis of BFS. Other conditions, other variants of motor neuron disease besides ALS (such as a condition called Kennedy's syndrome, some viruses, and other motor neuron diseases) could also be suggested or help be excluded with EMG. Continued follow-up with your neurologist is recommended.
Thank you for this opportunity to answer your questions, I hope you find the information I have provided useful, good luck.
First off, you sound like classic BFS (benign fasciculation syndrome). Did your neuro mention this possibility? If I were you, I'd say "no thanks" to this type of testing. Get the EMG. An EMG after this long of twitching would show anything nasty like MND. In order for fasciculations to be present with MND there would be some weakness/atrophy and the EMG would pick it up. I'm no expert, but I've been through this and am still twitching (mine started in January), but if you are twitching that long and have an EMG come back clean and have a normal clinical exam, I'd guess your doc will be able to rule out MNDs.
Check out this site if you want to talk to some people with lots of BFS experience:
http://www.nextination.com/aboutbfs/