Congenital hypothyroidism (CH) is a deficiency of thyroid hormone at birth. CH occurs in approx 1 in 4000 births. There are two types of CH - transient (temporary) and permanent.
Around 80 to 85% of permanent CH cases are due to a defect or abnormal development of the thyroid gland (dysgenesis). The other causes of permanent CH are inherited defects in the ability to synthesize and secret thyroid hormone (10% of CH cases); defect in the thyroid hormone transport mechanism; central hypothyroidism (hypothalamic or pituitary problems).
Transient (temporary) CH occurs in around 10 - 20% of births. Causes of transient CH are infant iodine deficiency due to insufficient iodine intake in the mother; TSH-receptor blocking antibodies (TRB-Ab) in a pregnant woman with autoimmune thyroid disease; anti-thyroid drugs taken when pregnant; fetus or newborn exposure to very high doses of iodine.
An interesting thread on bendectin:
http://www.medhelp.org/posts/Maternal--Child/anti-nausea-drug-banned-in-80s/show/158730