The property of latex as a material is to bind very closely, the molecular structure of latex is as such that if it is seperated, it will rip apart, there can not be a pin hole. The only exception would be if you draw a hole with a punch or prick it with a pin in it's non elastic state.
Perhaps, either you are not giving out correct information or the hole is drawn post usage of condom.
Chima7 has provided you an insight on your actual problem, please seek help if you are unable to think logically. There are no scopes for "What ifs".
If right after the sexual encounter you checked the condom and there was not any hole, the sex was protected and safe. If you checked it later on and there was a hole, that means that the hole was made once the condom was not on you penis, so the situation doesn't change.