Hello~The muscle pain you are having could very well be due to running again after not doing it for a long time. You could have some stiff joints and muscles and running is causing the pain to act up. The heart would naturally pound as your body is not use that type of exercise anymore, so, yes, the fast beating heart is very normal. The heart would beat faster anyway as the body is using up oxygen.
The fact that your pains last only seconds is reassuring, normally, heart attack pains last and get progressively worse. The pain could also be due to being uptight and worried over having the pain, thus, causing a chain-reaction so-to-speak.
I don't think you have a thing to worry about, your tests are all good, and your doctor seems pleased as well. If you are really worried, however, then ask for a stress test, this way, if your do get those feelings, the tech will be right there and will be able to reassure you that all is well.
I hope you feel better soon. God bless you.
The biggest fear is the unknown, recommend nuclear stress test if possible.
Normal to feel discomfort after exercise.
Only way to feel confident is to get stress tested though.