Was there any signs of dehydration? Because the headache could be coming from that, Fever does make you dehydrated.. As for the fever and the indigestion have they ran any test on your tummy? To see if there is anything wrong in there like gall bladder or appendix?
Have you been bitten or stung by anything, or been swimming in any lake?
Or used a restaurant before these symptoms appeared?
It may be worth getting a test to find out if you have an worms or parasites, or Helicobacter Pylori (the HP test is done by a breath test, sometimes by a stool test, blood tests are not reliable for HP).
Your body is definitely fighting something.